diff --git a/auto-fix-qortal.sh b/auto-fix-qortal.sh
index 05df340..8fe3ffc 100644
--- a/auto-fix-qortal.sh
+++ b/auto-fix-qortal.sh
@@ -428,6 +428,8 @@ update_script() {
     echo "${YELLOW}Checking for any settings changes required...${NC}"
     sleep 2
     potentially_update_settings
+    rm -rf ${HOME}/qortal.jar ${HOME}/run.pid ${HOME}/run.log ${HOME}/remote.md5 ${HOME}/qortal/local.md5
+    mkdir -P ${HOME}/backups && mv ${HOME}/qortal/backup-settings* ${HOME}/backups
     echo "${YELLOW}Auto-fix script run complete.${NC}\n"
     sleep 5
     exit